PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489373.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 418aa    MW: 45729.8 Da    PI: 4.616
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.57.2e-3798198197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                     klfqrlw++eDei lLqG++++++++g     s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk+++f+++hdq +fe+
  XP_016489373.1  98 KLFQRLWTDEDEIELLQGFLEYTTQRGGinssSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKMASGKDFVFKSSHDQATFEI 192
                     579***********************9877644555*********************************************************** PP

          DUF573  92 skkiWg 97 
                     s+kiW 
  XP_016489373.1 193 SRKIWS 198
                     *****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-34100198IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MASVEDQHNN QVYNDDDLDD DVVDEEDDDV DVDDDDDEDS TSSLPAPTPA PVDQQTVTIA  60
VVGVPAQRIN EFAAVTPPPT AATIVEEKKP SAIDDSRKLF QRLWTDEDEI ELLQGFLEYT  120
TQRGGINSSS HHHDTTAFYD QIKSKLQLDF NKNQLVEKLR RLKKKYRNVM SKMASGKDFV  180
FKSSHDQATF EISRKIWSNA VPIVVRGGGS AAPPPPEDGG FDDEDSHLNL NANFVDHSHN  240
GIDIKTPRSR KRSRGGAVKV EEKHGFIQHY YLPSPSGGGT NMSSPAPAPA PAPGFTPFPM  300
AAPQATAPPT TTAAVAASAA ASIPSLIEET VRSCLSPIFK ELLNNVTNLS GSRSFGFGMA  360
LSPIPLGFGS SGAMNSDMMA DEKWRKQQML ELEVYSRRLE LVQDQIKAQL EELRSMST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785461.10.0PREDICTED: uncharacterized protein LOC104233721
RefseqXP_016489373.10.0PREDICTED: uncharacterized protein LOC107809283
TrEMBLK4BAP31e-158K4BAP3_SOLLC; Uncharacterized protein
STRINGSolyc02g083750.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-78DNA-binding storekeeper protein-related transcriptional regulator